There is a disconnect between these two statements: " No alien civilizations have substantially colonized our solar system or systems nearby. Thus among the billion trillion stars in our past universe, none has reached the level of technology and growth that we may soon reach. " While the article is in a way all about exploring that disconnect, it's a bit strange to find it written down so explicitly in the conclusio…
The timescale for megascale engineering to occur throughout our galaxy as the result of the launch of one megascale engineering minded self replicating probe is small (1 million years) in comparison to the age of the galaxy (13 billion years). It is unlikely that we are sitting here while someone else is in the process of doing it; that's not the scenario to focus on.
All it takes, remember, is one small group in one sufficiently advanced culture to start this going. Some (post)human group will clearly do it at some point if we as a species continue. Why hasn't someone already done it, where "it" is visibly engineer the totality of the future light cone?
The problem is less one of why don't we see Dyson spheres and other similar type II projects within a few hundred light years of our position, and more one of why do we see no obviously altered galaxies among the hundreds of thousands cataloged to date. At this scale the zoo hypothesis looks stretched, and the simulation argument begins to look more plausible.