This has been addressed several times in the comments on this post, and the answer is no, it does matter that he has to select a goat. If he might have selected a car and just got lucky in selecting the goat, then all of the following had equal probability:
1. you picked car first, he picked the first goat
2. you picked car first, he picked the other goat
3. you picked first goat first, he picked the car
4. you picked first goat first, he picked the other goat
5. you picked other goat first, he picked the car
6. you picked other goat first, he picked the first goat
You happen to know that he picked a goat, so you can eliminate 3 and 5, but the remaining four possibilities are still equally likely. Half of them let you win by switching. This is also the "MH stumbles into a door on accident" variant that others have mentioned.
Another way of getting intuition about your version is to realize that, if he might have shown you a car, then the fact that he has opened a goat is evidence against the hypothesis that your first pick was a goat, because half of the times you choose a goat he would open a car, whereas if you chose a car he would have to show you a goat every time. It eliminates some of the ways things could have turned out if you started on a goat without eliminating any of the ways things could have turned out if you started on a car, so the former is relatively less likely in retrospect than it was before MH opened the goat. More obvious in the 100-door case: if your first pick was a goat, then the fact that he hasn't shown you a car after opening 98 doors at random (or equivalently leaving one door closed at random) either means that you were very lucky in the first pick and got the can (in which case it's easy to open 98 doors without a car) or he got very lucky in his random choices. Most games played in this way (98%) would end with MH revealing the car, and the fact that you don't happen to be in one of them only tells you that one or the other of you got very lucky. The probabilities work out that the two options are equally likely.