Earlier quoted context omitted.
Your formulation is once again ambiguous. Instead of clearly stating that Monty had to open 998 empty doors, you state that he did that. Which could mean he happened to do that. Had to vs happened to makes a big difference. Had he opened them at random and by (extremely small) chance they happened to be empty, the odds are quite different.
I'm trying to understand why the odds would be different if Monty opened empty doors by chance versus on purpose. Does it really change anything?
You had a 1/1000 chance of picking the right door at once.
Monty had a 1/1000 chance of opening only empty doors.
He had a 998/1000 chance of opening a door to a car, but that didn't happen.
So it's either of the other two cases, with equal probabilities.
If he used his knowledge to never open a car, the 998/1000 case wouldn't exist, and there would be a 999/1000 chance that the door he left unopened had the car.