Earlier quoted context omitted.
Asking genuinely: what point are you making with that EPA data? That switching our method of transportation is more impactful than switching our diet because transportation is a bigger chunk of the emissions pie?
Transportation and electricity add up to 52% of emissions. All of agriculture is 11%. What part of that is meat? A little more than half?
"Agriculture" appears to measure the emissions generated directly from agricultural processes themselves, as well as "secondary" combustion inputs. This includes "enteric fermentation in domestic livestock, livestock manure management, rice cultivation, agricultural soil management, liming, urea fertilization, and field burning of agricultural residues". However, based on my reading -- please correct me if I'm wrong -- large parts of the agricultural process are included in each of the transportation, electricity, and industry categories. Thus the effects of agriculture would be seen downstream and upstream in these other categories. For example, any agricultural use of electricity is included in "electricity", not "agriculture".
An aside on meat specifically: since meat production involves more inputs, such as feed, livestock, and additional processing, you would have to account for these when comparing to a non-meat diet. For example, every cow involves the transportation of the cow, the (industrial) production of fertilizers needed to grow its feed, the production of the materials to package the feed, the transportation of the feed to a facility for packaging, the transportation of the packaged feed to a farm, the transportation of the cow to a slaughtering facility, the refrigeration of the cuts of meat, etc. The emissions generated during these steps would belong to the transportation, industry, and electricity categories, not even counting the extra emissions included in the agriculture category. While all food production would have steps such as these, clearly there are more steps in meat production because there are more inputs.
Now, back to the original point of transportation versus agriculture: the report says that 25% of the transportation category is "freight" -- I believe the shipping I described above would be included in this. However, to your point, around 60% of transportation is due to passenger vehicles and light-duty trucks, which is quite significant and likely mostly personal use (rather than agricultural), and that's where changing transportation methods can make a difference. I'm too tired to find what percent of industry and electricity are related to the agricultural process, but you would need to calculate this and compare it to personal transportation use in order to get a fair comparison.
In my personal opinion, I think we should both reduce meat consumption and personal vehicle use. No need to pick favorites.