Earlier quoted context omitted.
Driving Rt below one will cause any species to go extinct. That’s just basic maths. If it’s not happening, then Rt is not below 1. As for the rest, you’re taking ideas that have some truth to them, and probably misinterpreting what these things actually mean and taking them unreasonably far or to the extreme: - Herd immunity is a thing, but I'm not sure how you imagine it in your head, or what you think that means. -…
R0 < 1 should be measured globally unless you're planning on isolating forever.
Rt is a measure of the real-life infectivity of a pathogen at a specific point in time, under no assumption of “normal life”, and possibly within some arbitrary geographical bounds. The purpose of Rt is not to measure the inherent infectivity of a pathogen, but rather its infectivity in a specific environment and set of circumstances: it’s the high-level metric that informs you of the combined impact of public health measures, social behaviour changes, immunity, etc, on the pathogen’s infectivity.
You can see Rt as being equal to R0 times some correction factor that accounts for everything else.