> Organizations are simply groups of people with a shared cause.
No, they're not. As soon as you have two people in an organization, you've got two different causes. The shared elements of those causes allow them to collaborate, but each of them has slightly different views of what they're working toward. And even when you have a very small, well-specified goal, every individual in the organization has different levels of investment, and other values and boundaries they're not willing to cross to achieve that goal. And the larger organizations get, the wider the variety of disparate goals that can occur within the organization, because individuals in the organization may not even interact directly with one another.
Example: John and Sam work for Facebook. John and Sam want to make money to feed themselves and their families, and don't want to have PTSD. But Mark Zuckerberg wants John and Sam to look at an endless stream of horrific PTSD-inducing images so that he can maintain the reputation of the Facebook platform and get incredibly rich. Where is the shared cause here, exactly?
> To deny rights to the organization, you necessarily have to deny personal rights.
Just because an organization doesn't have rights doesn't mean we have to go out of our way to take away their rights.
> Example: John and Sam form an organization for comic book collecting. They have a secret meeting to agree on a price to offer a potential seller of a rare comic book. Since John and Sam, Inc. “Have no rights” the seller is allowed to sit in the room during their meeting. However this violates the right of Sam to freely associate with John and his right to not have to associate with the interloper. It also violates the privacy of San and John as individuals since their private conversation — even as members of their two-man organization are now being shared with anyone who wants to sit in since, in this scenario, their organization doesn’t have rights.
It sounds like you've figured out that John and Sam, as individuals, each have a right to have a private conversation. John and Sam, Inc. doesn't have rights, but that doesn't suddenly remove John and Sam's individual rights.
The entire point of organizational transparency is to protect the rights of individuals, so obviously if organizational transparency would violate the rights of individuals, the individual rights to privacy supercede the need for organizational transparency.
It's telling that your example of an organization has two people in it. At a small scale, organizations tend to protect the rights of the individuals in the organization fairly well. It's at larger scales that the non-rights of an organization come in conflict more often with the rights of individuals.