I took a polygraph twice for an NSA internship (TS/CSI Clearance). It's an interesting process. In the first phase, you go over your security forms (SF-86 and related) in detail with your polygraph examiner. They ask a lot of detailed questions, sometimes including things you aren't legally required to disclose (drug use and foreign travel outside the listed time limits). In the second phase, they hook you up to the…
Very similar to my experience, but different 3-letter agency. Two rounds. Lots of questions about drug use. I wasn't shy about it because I had had legal run-ins over it when I was young so I knew it was already out there. But examiner claimed that I was being evasive. My employer really wanted me cleared so I was coached a bit, told that unless I admit to being a spy it almost doesn't matter what I admit I have done…
But maybe I'm being to generous.