Wouldn't new projects also be using the latest stable released version of the language (and hence standard lib) that's shipped with their distro or wherever they're getting it from, especially in the deployment environment? Or at least I think they'd be as likely to do so as getting the newest versions of libs from the lib repository...
Unless, and maybe this is a source of disagreement, it's still the standard in Node land to specify dependencies as "whatever the latest version is, I don't care"? That approach has teeth. After you've been bitten a few times you learn to say "no more" and version pin. There are other nice benefits to version pinning too (like reproducible builds). It's pretty common in Java land, even though some people still specify "version x or higher". It's a tradeoff.
One downside is that if you don't occasionally check maven central or wherever for new versions you might miss a security issue, and if you're copying dependency specifying files over to new projects the issue will persist. This is solvable with tooling -- http://www.mojohaus.org/versions-maven-plugin/ comes to mind and I was pleasantly surprised to get an email from Github that even a toy project of mine pointed to a version of a JSON parser with a known issue.
> What if we come up with a newer way to do async? Do we add yet another API?
Sure. Especially if people were just fine using the older API. For the fs situation, putting it in its own package would be great, up until the point I have to modify years-old code that's been working just fine through upgrades until someone decided to break things... for JS that's even more intolerable since nothing in the type system forbids the function updating to accept a promise or a callback. That (as would be a new API for async) would be a non-breaking change, it only provides more and the requirements for old code are the same.
If it's possible to break up the core in a way that preserves legacy code, I'm all for it. Java's Project Jigsaw did this to an extent with its module system. Another way to help that is to separate what's standard (such as with an official ANSI or ISO standard) for the language and what a particular implementation of the standard bundles with its releases on top of the standard. I recall at one point the old IO fork of Node promised to never break "core javascript APIs", but the industry consortia that defines what that means makes me think it was more a hollow promise.
To take an example from a language that has official standards, C, across decades of versions of C compilers and standard libraries from various vendors, if my code is C89 then it compiles with compilers that support C89. People might be offended that a function like strcpy exists, but it's there, I can use it if I want, or a separate library like bstring, or maybe the compiler provides their own __builtin__strcpy_chk that I can use directly or switch between with a flag (_FORTIFY_SOURCE). This might end up being less work for the compilers, too, since they don't need a security bulletin saying "some uses of strcpy can lead to a buffer overflow, removing it in v2.1.2, update immediately to strcpy2". They can (and did) just provide a new strcpy2, made available a seamless upgrade (I believe even Node has done this with some shims for deprecated APIs) if you don't want to change the source text, and warn people about the old one.