The other half of that equation is that the requirements for a security clearance tend to filter out the people who are mentally predisposed to question authority.
It is a very rare person who can see all the things wrong with the various Wars on Dignity (drugs, terror, etc) and yet has a nose so clean as to qualify for a top secret clearance. It's kind of like the saying about walking a mile in someone else's shoes before you criticize them - most people just can't conceive of what life is like for someone with an entirely different set of experiences and the logic of authoritarianism is so deceptively simple.
That's not to say that the people with clearances aren't perceptive, just that they are likely to have a focus on other, more technical, issues.