This applies to pretty much every pkg manager ever created. That's why it's important to have end-to-end package signing with a reasonable UI, so people can choose to selectively trust the sources they need and get alerted before new dependencies get pulled in. Sadly I don't know of any pkg manager that implements this correctly.
I find the apt package model to be very good (add trusted keys & repositories explicitly). What do you see as the shortcomings of apt compared to your ideal?
Sadly it's still using a flawed[1] trust model where you trust repositories rather than publishers. And the UI-shim over GnuPG is 'basic' at best (to put it politely).
To add insult to injury deb/dpkg itself actually does contain a mechanism for package-level signing. But as far as I know no distro is using it.
To add even more insult to injury, all mobile platforms and both Windows and OSX have more reasonable package security models than Linux today.
[1] This is fine for guarding against compromised mirrors - and not much else.