The article makes a few generalizations about evolution that don't really hold up. The idea that evolution does not have agency needs to be re-examined in the light of the fact that animals themselves have far more agency than we realized. To use the author's example, cheetahs may well have all decided as a group to run faster, in the sort of 'social learning' way that we're just now starting to really get a grip on.…
"...we don't know how genomes hold on to experiences and then pass them along to our offspring. " Err they don't. That's Lamarckism theory, and I wasn't aware there was even a shred of evidence towards it. Sometimes when you don't know how something happens, its because it isn't actually happening
You don't actually need any information or experience to pass through to the next generation for behavior today to affect long-term evolution. Even if the only thing that's going on is that a population is using social learning to bring individuals closer to their genetic potential in one way, that way will be selected for in future generations. The genome itself could acquire adaptations during life, and those adaptations will then pass to their offspring. One would expect these 'mutations' to be really small, but add up quickly over successive generations.