The simple solution is to not allow your anti-virus software to scan anything that cannot malware. There are exceptions to the rule of course such as MP3s that had executable code, but why does it need to scan every single file on your system? Full disclosure: I used to work for an AV software company and personally think that AV is a dead technology.
Could you elaborate on why you think it's a dead technology?
We're at a point now where what may have worked as a defence against stuff being found on floppy drives just isn't able to scale for today's modern infrastructure.
AV is really a last-line of defence against being forgetful, and nothing more.