Basically, NIST seems to be reasoning that because Keccack's sponge construction has no internal resistance to meet-in-the-middle attacks, the collision and preimage resistances are the same. An upper bound on the security of Keccack is set by the expression c + r = 1600. 'c' represents the internal bandwidth of the hash that is not directly controllable by an attacker. 'r' is the rate (bits per expensive f() functio…
On top of that, Keccak's software performance is nothing to write home about and SHA-256 and SHA-512 look a lot safer now than they did when the SHA3 competition was started. The reasonably large performance boost the capacity changes could bring about might help SHA-3's case a bit for software developers who have barely started moving away from SHA-1 (if they're not still hanging on to MD5).
While 512 vs 256 bits of pre-image security for SHA-3-512 (which the author seems to think is an unacceptable security downgrade) is interesting to discuss in an academic sense, it seems ludicrous to suggest the change would actually benefit someone trying to break SHA-3. Any adversary able to perform 2^256 operations is so far beyond modern cryptanalysis that everyone might as well just give up.