Earlier quoted context omitted.
Ruby doesn't have great support for math, science or AI. There are projects out there trying to make the ecosystem better, but currently it trails Python.
For biology -- especially the genomics side -- Perl was absolutely dominant 10 years ago. It's been gradually edged out by other things (substantially Python and R) since then. Desire for better statistical tools may be a driver here, but it's interesting that it's led to a switch of languages rather than building more stats tools for Perl
However, Python is still my main language and I am very happy with that. The numpy/scipy stack and everything building around that is incomparable to anything in Perl of Ruby. Also for the last month or so I have been doing work in the IPython notebook. It has really helped my productivity and documentation efforts. And it looks really cool.