Git worktrees are a great isolation boundary for _changes_ (especially making changes in parallel on a single machine), but not behavior. If you are trying to actually run autonomous agents securely you need something that lives outside the harness that actually blocks actions in a way that can't be prompted around. We use nono [1] for this internally, essentially blocking any actions we don't want agents to be able…
"read/write only the worktree", but git requires .git dir writable for common commands to work in a worktree. And that's where .git/hooks live. So agent inside that profile can still write a pre-commit hook that runs on your machine whenever you commit outside the sandbox. Or am I missing something?
Worth calling out that this doesn't close all of these types of attacks, just the ones that are invisible (claude could very well write ./hack.sh and tie that in to your main.go, but at least it would be a diffable change, instead of invisible like a git hook)