I haven't actually used Lean or other proof assistants, so take this with a grain of salt, but I think the basic idea is to use (complicated) function argument and return types to "encode" the spec, and rely on the compiler's typechecking to detect spec violations.
To get the feel of this it might help to start with a simpler example: If you declare a function in ordinary old Java with return type int, the Java compiler will complain unless every path through that function returns either an int or something that can be converted to it (or throws). Lean is similar but uses a much more powerful type system called dependent types, which gives you extreme control over the values that are permitted in a type: For example, in Lean it's possible to define a type that consists of just the even integers, or even just the prime numbers. If you define such a PrimeNumber type, and then declare a function that returns a PrimeNumber, the Lean compiler will complain if the function could ever return a number that is not prime. IOW, if your function compiles with no errors, it is proven to always return a prime number.
I expect that OP's code defines a function named something like intersect(), and which takes 2 arguments of a type named something like Mesh, and returns not simply another Mesh but in fact a more complicated type: specifically, a Mesh that is somehow constrained to be a sub-mesh of each of the first and second arguments. Since mesh intersection is deterministic, I expect that this more complicated type will turn out to be inhabited by just a single value (mesh) -- similar to a type FortyTwo whose only value value is the integer 42. (I'm assuming here that a mesh can only be represented in one canonical way; this might not be true.) Then, Lean will complain at compile time if there exists any conceivable pair of input meshes for which the function would construct the wrong intersection.