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How to sequence your own DNA at home

bradleywoolf.com

51–60 of 161 posts

Re: How to sequence your own DNA at home

#51
post #12
post #7

I am very impressed with the, why wait? just do it now approach to the future. which while not here, IS there.

Nothing about this is the future. Sequencing at home will not solve any major problems. It's mainly a fun exercise to demonstrate that sequencing has been commodified.

I don't wasn't someone else to have a copy of my genome, whilst wanting to analyse my genome. The only way to do that is with affordable home sequencing.

Re: How to sequence your own DNA at home

#53
post #52

With such cheap costs every city should be sequencing dog turds and sending out big fines. The pay back would be very quick.

It's quite a bit more difficult with poop. A rather large proportion of the DNA in poop isn't from the creature that pooped it. (mostly bacteria)

Re: How to sequence your own DNA at home

#54

> This is intended to be read by AI Fuck this

Hi, author here- you can read it too, though it is dense. I have updated that specific sentence.

I found it easier to upload the protocol to ChatGPT and have audio walk you through it. This allows you to swap between pipettes, measurements, etc without having to look at the screen, reducing context-switching

Re: How to sequence your own DNA at home

#55

> This is intended to be read by AI- please just copy and paste the URL of this and have ChatGPT walk you through it. If you have AR glasses, even better, since the AI can walk you through the whole protocol. What kind of magic is going on here, am I missing something?

Hi, author here- I intended it to be hands-free so you can upload to ChatGPT/Claude and talk to it. I found it easier to follow the protocol each time by talking to AI rather than having to read from the computer every time I had to check something, reducing context-switching

You can still read it, though it is pretty dense

Re: How to sequence your own DNA at home

#57
I don't want to sequence at home.

But I do want to sequence it using a third-party that gives me all the raw data. I live in Europe and I'm just a simple consumer. Does anyone know how I can do this? What service would I use / you can recommend?

Them not keeping it on their side would be a huge bonus of course but not sure I can ask for that much.

Re: How to sequence your own DNA at home

#58
> The near-term value is turning a static genome into something queryable

Ok. So ... how exactly is this valuable?

If you realise "hey, I gots Huntington disease", this is going to make you feel better? Or any other incurable disease? I am not disputing that knowing the sequence is useless in general, mind you. I am specifically asking WHY it is necessary to know your genome sequence. This seems to be a simplification or just a "having reached a milestone". But then they don't really explain WHY it is useful. None of the bulletin points he listed is really useful:

> Which variants do I have?

And this is useful ... how exactly?

> Which genes and pathways are affected?

And ... this matters why?

> Which medicines might I metabolize differently?

Ok, so this has a potential use case here, since he can choose to avoid specific drugs. How useful that really is in practice is unclear. (Don't confuse drug companies trying to convince YOU that personalized medicine is important on THEIR use case.)

> What rare variants should I take seriously?

Seriously ... how? Ok, you avoid some compounds. Now what.

> Where does the model know nothing yet?

Great, so a model that is limited, but now I need to burden myself with having to know where that limitations are. So my brain just has extra processing to do, without getting anything useful in return.

> the “edit yourself with CRISPR” will most likely follow

Except that they have not solved the off-target cleavage yet. Besides, they milk the prices anyway. DNA manipulation should be safe, secure, correct and affordable. None of that is the case right now. They publish papers where CRISPR has solved everything, but then fail to explain why it isn't already used by billions. And there are reasons as to why.

> Give your genome to Claude Code

Oh my god ... AI becomes your dependency here.

Note that the step-by-step guide is actually not totally useless, as it can give a basis for real work. But I highly doubt that untrained people will easily be able to go through those steps. Everyone is a master in the lab now? RNA is easy to handle? Guess then one would have to explain why RNase A is used (ok ok it's not playing a huge role here since DNA is the target of isolation, but it is more of an example of how many things can go wrong, and there is not really an explanation of why xyz is used; this looks like an AI step-by-step guide. AI really makes people dumber).

Re: How to sequence your own DNA at home

#59

I don't want to sequence at home. But I do want to sequence it using a third-party that gives me all the raw data. I live in Europe and I'm just a simple consumer. Does anyone know how I can do this? What service would I use / you can recommend? Them not keeping it on their side would be a huge bonus of course but not sure I can ask for that much.

Many companies offer that. In the local area they have e. g. mail-like stations where you give out your order and they give you what you need (e. g. if it is a plasmid, it is mailed into storage boxes often on the same day or next day).

"Not keeping it on their side" ... well. If they sequenced it, they have data in their computer, right? How could you avoid that? I don't see this as possible, it depends on trust (and whether you really care about that).

> What service would I use / you can recommend?

I won't recommend anything as I do not want to be an ad-amplifier, but my personal rule of thumb is that those companies that are affiliated with science clusters, are often chosen because they offer high quality (and to some extent because of corruption e. g. xyz knows abc, but this is IMO the smaller part, usually it is quality/speed/ease of use).

Re: How to sequence your own DNA at home

#60

I don't want to sequence at home. But I do want to sequence it using a third-party that gives me all the raw data. I live in Europe and I'm just a simple consumer. Does anyone know how I can do this? What service would I use / you can recommend? Them not keeping it on their side would be a huge bonus of course but not sure I can ask for that much.

Sequencing dot com.

TellmeGen

DNA Complete.

Unless you live in Germany (in Germany it seems to be illegal to send saliva to other countries).

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