Earlier quoted context omitted.
I've been arguing for this for years. There's no reason every random binary should have unfettered, invisible access to everything on my computer as if it were me . iOS and Android both implement these security policies correctly. Why can't desktop operating systems?
Mobile platforms are entirely useless to me for exactly this reason, individual islands that don't interact to make anything more generally useful. I would never use any os that worked like that, it's for toys and disposable software only imo.
In such a scenario, you can launch your IDE from your application manager and then only give write access to specific folders for a project. The IDE's configuration files can also be stored in isolated directories. You can still access them with your file manager software or your terminal app which are "special" and need to be approved by you once (or for each update) as special. You may think "How do I even share my secrets like Git SSH keys?". Well that's why we need services like the SSH Agent or Freedesktop secret-storage-spec. Windows already has this btw as the secret vaults. They are there since at least Windows 7 maybe even Vista.