I studied at Utrecht University and all the programming classes in the Bachelor were C#, Visual Studio, XNA, DirectX. Windows. Database class i had to learn in Proprietary Microsoft tools too. All Microsoft stuff. Sure nobody would complain if you did stuff on Linux but all the support by TAs and teachers was on Microsoft platforms only.. The Master was much better but the Bachelor basically was grooming people to be…
TBF, the curriculum being MS based can mean very little if the concepts taught in are valuable enough. I've briefly looked at the project linked in your user description, and they don't look nice and absolutely not tinted by MS influence.
It is indeed dancing with the devil, but if MS forks the money to renew the whole university's computer park, clear all the licensing issues and train part of the staff, it can be a boon for the university.
My uni had a deal with Sun (RIP), many basic courses were in Java, all our system programming course we're Solaris targeted, all servers were Solaris anyway so our code had to run there. It's a pretty basic arrangement IMHO.