One less-secretive way I've seen pregaps used is for live recordings.
The crowd noise betwixt songs can be contained in a pregap, so that it is only ever heard when listening to the album straight-through (instead of in shuffle or track-program mode).
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Another fun feature of audio CDs is indexes.
A disc can have 99 tracks, and each track can have some pregap (including track 1, as the article discusses). And each of these 99 tracks can be further subdivided with 99 index markers.
This gives a CD the theoretical ability to have 9,801 selectable audio segments.
Although realistically, I've only owned a couple of CD players that even displayed index numbers and exactly one CD player (a Carver TL-3300) that allowed a person to seek to a given index number within a track.
(And I've only known one CD to actually make use of indexes in any useful manner, which was a sound effects CD from the early 1980s that had a lot more than 99 sounds on it -- all organized by tracks, and sub-organized by index marks. I just can't think of the name right now.)