A problem with that is that it can be easy to make claims about unconscious, as you can be loose with how and if it can be observable. The main core of "our" (Western) philosophical, ethical, legal, artistic etc. concepts predates closer intercourse with Judaism and derived religions, whose ideas were later patched onto that system. (Modulo long term cultural diffusion in Mediterranean which was long somewhat undervalued in historiography.)
Of course seeing Enlightenment as anti-Judeochristian in principle is a misunderstanding: Kant was one of the last great philosophers to sort-of rescue monotheism in his system. Most of 'philosophes' were Deists, Rousseau trolled them by being a Calvinist. What counts for Enlightenment is justification, not genealogical provenance of the idea. Later German post-Enlightenment philosophers were much happier to be godless.
I think the main problem with Enlightenment is how it has been abandoned, and the main reason is that it is easier to organize and dominate people with a faith-based doctrine (be it a traditional religion, or mass ideology).[1] The main thing that Enlightenment has going for it is that eases the access to material truth and fruits of free inquiry and inventiveness.
Can't say what will win, in the long term. It's an interesting question about human society folding into itself vis-a-vis physical world. I think you can be forgiven for thinking that Enlightenment is now in a path to being extinguished, but on the other hand, people are still aware of it. Seeing abuses of fundamentalists in power, they have where to turn to. I myself went through that transformation from oh-so clever "seeing the limits of reason wow" youth in the neoliberal era.
[1] Auguste Comte's positivism was an... amusing? attempt at creating an rational-scientific religion. There were of course others.