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Lab leak fight casts chill over virology research

nytimes.com

191–200 of 253 posts

Re: Lab leak fight casts chill over virology research

#191

Earlier quoted context omitted.

Describing NIMBYism as "narcissistic assholes" is a gross oversimplification, and misses the point I'm getting at. In the US, you'll reliably get a lot more NIMBY response from "set up a nuclear power plant in the neighbourhood" vs. "set up a gas power plant in the neighbourhood". However, if you look at the risk assessment, the gas power plant is far more lethal to the neighbourhood.

> you'll reliably get a lot more NIMBY response from "set up a nuclear power plant in the neighbourhood" vs. "set up a gas power plant in the neighbourhood" I don't associate the term "NIMBY" with either scenarios, just housing. I don't think there's much value to overloading it. It's not like anyone's trying to put a nuclear power plant in the middle of Boston to begin with.

> I don't associate the term "NIMBY" with either scenarios, just housing.

You might not, but the broader population associates NIMBY with any scenario where a neighbourhood pushes back against some kind of change in that neighbourhood (adding a prison, a power plant, a half-way house, a school, a bar, trains, airports, etc.). There are NIMBY responses to pretty much any change, and the magnitude of that response tends to have little bearing on the relative merits of the change.

> It's not like anyone's trying to put a nuclear power plant in the middle of Boston to begin with.

No. For the most part no one is putting nuclear power plants anywhere in the US. However, there are other power plants in Boston (and for good reason). This is a direct byproduct of the NIMBYism I'm talking about.

Re: Lab leak fight casts chill over virology research

#192
post #141
post #116

Earlier quoted context omitted.

Everyone in this thread seems awfully convinced. There is as of yet no proof that's the case. Nor that GoF created the strain. Both are just conjecture. Seems pretty foolish to end valuable research to appease people who fear things they don't understand.

We don't know if the virus came from a market either, so why would that be the default position? Especially since that position requires accepting a hell of a coincidence that the virus just happened to emerge near a lab working on gain of function research for that type of virus. China's lack of openness to investigating this should also skew us against giving them the benefit of the doubt, rather than the opposite.…

Every pandemic ever has been caused by a natural source. Most pandemics happened before virology was a field. The default assumption from the start was animal source until there's proof it was something else.

Re: Lab leak fight casts chill over virology research

#193

Earlier quoted context omitted.

I'm not sure you establish the 100X-10,000X measure. How did you calculate the realized benefit? How do you quantify the relative impact of extinction?

The approximate loss of life for major outbreaks in the past 25 years (excluding Covid) was around 500K. In a best case scenario GoF could have mitigated maybe 20% of that or 100k. Let' say one research initiative as r, the chance of that research being successful as s, the chance of that research being on the exact virus causing the outbreak as v, the type of mutation research being the actual mutation the virus had…

I'm not sure I followed your reasoning entirely.

You mention rapid sequencing, rapid wastewater monitoring, PPE stocking/distribution policies, and more effective local lockdown procedures/policies. Those would all be factors that would reduce the value of "X" (as in, the consequences of bad outcomes in either scenario), rather than any coefficients in front of X.

I don't necessarily agree that the past 25 years, particularly if you are excluding COVID, is a meaningful representative sample... unless you want to compare it to the loss of life from GoF over the past 25 years excluding COVID. In that case, I'd challenge you to demonstrate a loss of life from GoF research that is over 10K. Given the ~100K lives estimate, that puts it at 10x greater benefit than not doing GoF research.

> However if we undergo a similar exercise of chances of Lab leak causing an outbreak we'll probably end up with a similar figure of 1/100. In a lab leak we'll have to contend with a more powerful variant of a pathogen that has caused a prior outbreak which may kill an order more people than the average outbreak.

There's a number of false assumptions here. Your threat assessment seems more rooted in works of fiction than reality. That the probability is equivalent is highly debatable, particularly since it is far easier (and cheaper) to apply risk mitigations to a virology lab than to society as a whole. It's also not a given that a lab leak means we'll have to contend with a more powerful variant of a pathogen. Even if it were a more powerful variant of a pathogen, that does not necessarily relate to a higher death toll. In fact, SARS-COV-2 was far less virulent than SARS-COV-1, and that's a significant contributor to why it had so much more impact.

Even if we ignore ALL of that, in the even that there was an outbreak from a virology lab doing GoF research, that would mean we would be much further ahead on research to combat the virus than if said virus were to occur in the wild. We'd have shorter times to have disease profiles, tests, epidemiological models, and vaccines, and the impact of shorter times is exponential. While it is conceivable that a leak from a lab leads to a higher death count, it is far more conceivable that a virus that didn't come from a lab would end more lives.

> if we entertain that Covid was caused by a lab lead ~10m deaths, or 100x of 100k.

Spanish flu, which existed before anyone knew how to do GoF research, killed far more people than COVID-19. At the lowest estimate, it's about 17 million people, and at the high end closer to 100 million people. The population of the world at the time was ~1/4 the population when COVID-19 hit the scene, so on a per capita basis COVID-19 isn't in the same league. AIDS, which we've been able to track back to its natural origin, has killed 42 million people. The Bubonic Plague killed... 75+ million, or about a third of the European population.

Nature is way better at killing us than any lab.

> Ultimately it seems GoF research is playing with fire without knowing if the effort actually will reduces total deaths on net.

Another way to think of it is that international trade & travel is playing with fire without knowing if the effort actually will reduce total deaths or not. We could therefore return to the days of the horse and buggy, or we could continue with the practice and put in place mitigations, like GoF research, to mitigate the risks it entails.

Re: Lab leak fight casts chill over virology research

#194

Earlier quoted context omitted.

> Viruses and bacteria are unique in the fact that they can harm the whole globe as opposed to chemical and other disasters that will likely only harm the immediate area. First of all, you added in bacteria, which are not viruses. However, this statement isn't a useful statement "X is unique because it can harm the whole world, as opposed to Y that will likely only harm the immediate area". The implication is that X…

Nature has a more limited tool kit and has limited ability to bring together virus genes that would otherwise not occur in the same nucleus.

> Nature has a more limited tool kit and has limited ability to bring together virus genes that would otherwise not occur in the same nucleus.

Would that that were true. I'm curious how you explain how your perception aligns with the reality that no lab, anywhere, at anytime since the outbreak, has been able to produce COVID-19 variants as fast as occurred naturally.

Nature is experimenting all the time, with the overwhelming majority of viruses out there, with absolutely no interest in controls, mitigations or protections for the human population... and nature is far trickier to observe. We've gotten pretty good at reducing the risk from nature, but make no mistake, even with all the GoF research we could possibly hope for, it far outpaces our capacity to experiment. The only advantage GoF labs have is that they can direct their research in specific areas where there is greatest risk. That's the whole challenge.

Re: Lab leak fight casts chill over virology research

#195

Earlier quoted context omitted.

> I assume the biological samples need to get transported at some point anyway. The researchers would need to live on-site. Yes this would dramatically increase the cost. If you're worried about lab contamination, the risk is from the researchers moving amongst the population. I agree that you'd rather not, but I don't agree that regularly putting them on planes to and from major population centers really reduces the…

> I don't agree that regularly putting [gain of function researchers] on planes to and from major population centers really reduces the risk. This would have to not happen regularly. The researchers would need to stay for many months at a time, and undergo a separate quarantine before they re-enter society.

> This would have to not happen regularly. The researchers would need to stay for many months at a time, and undergo a separate quarantine before they re-enter society.

So you would add months of delay, significantly impaired observability, and far less agility to our response to emerging threats. Congratulations, you've just increased risk.

Re: Lab leak fight casts chill over virology research

#196

Earlier quoted context omitted.

It's not a court case. There's not a burden of proof. What there is, is a risk analysis, which means you have to consider the risks of any particular action as well as in NOT taking the action. I've seen literally no discussion about the risks of NOT taking the action. I'm reminded of self-driving cars, because we're worried they might lead to the deaths of thousands of people each year. Meanwhile, over a million peo…

Well we spent over a decade and millions of dollars studying SARS coronaviruses and yet none of that work was of any help in fighting the pandemic. For example Ecohealth which was publicly funded with our tax dollars has still to this day refused to share it's research/samples/data despite being legally obligated to. The most charitable interpretation for refusing to share this information while millions of people ar…

> Well we spent over a decade and millions of dollars studying SARS coronaviruses and yet none of that work was of any help in fighting the pandemic.

Wow. Just wow.

It's statements like this that make me think we should indeed halt all virology research, and really all medical research and development entirely. We deserve what we get.

Re: Lab leak fight casts chill over virology research

#197

Earlier quoted context omitted.

Unfortunately, that sort of GOF research is at the top of the list of GOF utility. Because animal virii making the jump to humans is the risk factor the international epidemiology community tries to protect against, for the very reasons you've highlighted: the harm when it occurs and the frequency with which it occurs (rare, but often enough to create a once-a-century firestorm, at least). Spanish Flu was likely an a…

Do you actually need GoF research to prevent animal spillovers? Did GoF research help us develop the COVID vaccines? Or does GoF research mostly demonstrate the risks of spillover? Because I think we're now well aware of the risks, and ought to avoid poking the bear any further.

Yes because despite the known risks we need to understand these viruses and what causes across species transmission so that we can prepare for future pandemics (even those caused by spillover mistakes) and what we learn may also prove useful in other applications.

Otherwise we are in the dark with unknown unknowns which is not a good place. So the risk here of doing research is manageable.

Re: Lab leak fight casts chill over virology research

#198

Earlier quoted context omitted.

> Simply because nobody has a pre-existing immunity There is good evidence that those who had SARS-CoV-1 had immunity that covered SARS-CoV-2. This immunity lasted for more than a decade. > What I found scary about SARS-CoV2 is just how much it improved between variants. Perhaps a leaky spike only vaccine was a particularly bad choice and the extent to which it drove these variants is not clear. There is additional d…

> I simply do not trust for profit drug companies to do this work. I certainly don't trust governments to do it either. But you trust nature to do this work? ;-) > Further, the idea that we can correctly estimate how nature is going to perform and then front run those outcomes in the laboratory is entirely insane and is explicitly anti-science. Well, this eliminates a great deal of research areas completely outside v…

> But you trust nature to do this work? ;-)

What work is that? Unnaturally bringing bats and pangolins together in a meat market? The only "real world" excuse ever offered.

> Climatologists aren't needed.

I've read their reports and their annual revisions. I'm not convinced they're needed, and since the "science" here is purely a wild guess using models projected backwards in time to fit existing data, the results aren't particularly meaningful either.

> Seismologists aren't needed. Meteorologists become largely irrelevant. Much of cancer research, forestry, etc. isn't needed. Certainly no need to take measures for forecasted hurricanes or tsunamis.

Do any of these require you to invent novel phenomenon to "study?" If not, then your comparison is purely the making of a strawman.

> but we sure do a lot better making forecasts and reacting to them than when we don't.

Interestingly.. was any "forecast" of the virus they created in a lab provided to anyone? Even if we did have it, would it have made a difference in timelines? You clearly see the exact problem.

Re: Lab leak fight casts chill over virology research

#199

Earlier quoted context omitted.

> Simply because nobody has a pre-existing immunity There is good evidence that those who had SARS-CoV-1 had immunity that covered SARS-CoV-2. This immunity lasted for more than a decade. > What I found scary about SARS-CoV2 is just how much it improved between variants. Perhaps a leaky spike only vaccine was a particularly bad choice and the extent to which it drove these variants is not clear. There is additional d…

> There is good evidence that those who had SARS-CoV-1 had immunity that covered SARS-CoV-2. That is a tiny tiny number of people, measured in thousands at most.

> That is a tiny tiny number of people, measured in thousands at most.

Does that somehow prevent you from getting them to express those antibodies and then cloning them?

Re: Lab leak fight casts chill over virology research

#200

Earlier quoted context omitted.

Do you actually need GoF research to prevent animal spillovers? Did GoF research help us develop the COVID vaccines? Or does GoF research mostly demonstrate the risks of spillover? Because I think we're now well aware of the risks, and ought to avoid poking the bear any further.

Yes because despite the known risks we need to understand these viruses and what causes across species transmission so that we can prepare for future pandemics (even those caused by spillover mistakes) and what we learn may also prove useful in other applications. Otherwise we are in the dark with unknown unknowns which is not a good place. So the risk here of doing research is manageable.

Then why wasn't it managed?
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