You managed to misunderstand both Casey Muratori and Donald Knuth. You are not alone, the majority of the industry seems to have gotten it wrong.
Casey tells you that following "Clean Code" can give you a huge performance hit for no obvious benefit. And even if "Clean Code" were to be more maintainable (it's not; in my experience, it's actually worse for maintainability), you should still be extremely aware of the cost you're likely to pay down the track. It's not a contrived example, it's literally textbook "Clean Code".
I'll say it again: "Clean Code" gives you slower, less maintainable code, and you get nothing from it. Maybe you can afford it, maybe in your use case it's not a big deal, but you should be informed.
Knuth tells you to measure before optimizing, which Casey did. Knuth does NOT tell you "don't worry about performance, you'll optimize later". You quoted Knuth but stopped right before the best part:
> A good programmer will not be lulled into complacency by such reasoning, he will be wise to look carefully at the critical code; BUT ONLY AFTER THAT CODE HAS BEEN IDENTIFIED [emphasis mine]. It is often a mistake to make a priori judgments about what parts of a program are really critical, since the universal experience of programmers who have been using measurement tools has been that their intuitive guesses fail.
To recap: "A good programmer will not be lulled into complacency by such reasoning" - in other words, just because 97% of the code may not need optimization does NOT mean you should not be thinking about performance.
Knuth's point is that when identifying hotspots, programmers were relying on intuition rather than measurement. That's what he meant by "premature optimization". Knuth did not mean (especially since it was the 70s) you should write "Clean Code" that you know has worse performance for little benefit.
And Knuth does not write "Clean Code", by the way.
> The author of the post fails to articulate how we strike a healthy balance
There is no healthy balance between a good idea and a bad idea. Just eliminate the bad idea.