True, but that's a fairly recent phenomenon and it's not even true for the more fundamental discoveries. Unless you mean the philosophical ideal of empirical research, in which case I would say that your view of the situation is flawed. It's only really true for simulation experiments, like those that try to simulate the entire universe, from a uniform inflation onwards. Few discoveries have been made that way though.
The use for limited-application theories is obvious. With the exception of lithography for chip design, all of electronics works with classical electricity theories. All of architecture, by now capable of constructing objects that are several kilometres high, works on classical mechanics. All of computer science works on ZFC, when it's obvious that real machines don't actually implement that. Or dumb mistakes in algorithms that are "assumed correct" anyway because we don't know how to fix them (such as several tree traversal techniques claimed to be O(N) yet in reality more like O(N^2) because they fuck up virtual memory by allocating memory like Obama allocates money.
Hell, I'm told that even ITER's reactor design is tested with classical simulations, with one or two correction factors to "compensate" for quantum phenomena (but not using the quantum formulas, because that doesn't work). Even inside the LHC 99% of the design is made using classical formulas, basically everything except the targets.
Physics itself could be said to use pre-Godel mathematical models (since we haven't quite figured out how to fix the problem Godel pointed out while getting pelted with tomatoes, that's more of necessity than stubbornness of course).
The reality is that science is back in the 1900's before Einstein : we have several big flaws in our theories staring everyone in the face, making lots of people angry. At the same time scientists are telling everyone that science will solve every problem very soon now (or at least not contradicting it). In the meantime nobody has any clue how to fix the gaping holes in our most fundamental theories.
Maybe it's time we did an exhaustive search of patent offices and Italian kindergarten teachers ...