The evaporating water does convert (to use the traditional terms) sensible heat into the latent heat of water vapor, and you might think that this heat should be discounted from the heat you're getting out. Sometimes it should, but not other times, because if the water vapor condenses again inside the house (for example, near the surface of the plaster in cold walls) it will release this heat again as sensible heat. In other cases, it's worse — I've had the displeasure of staying in a cold guest room where the blankets were all slightly damp from such condensation and so failed badly at keeping me warm.
In that case, the water vapor had been produced not by evaporating standing water but by burning natural gas. Be careful.