Earlier quoted context omitted.
IIRC the system Bach was pushing wasn't actually equal temperament, but "well temperament" which was some sort of compromise between equal temperament and having pure fifths everywhere. The result was that all twelve keys sounded acceptable, but some keys had purer fifths or thirds than others. Some musicians/scholars say that Bach composed the different preludes and fugues specifically to use the resulting different…
This is my understanding too. I have a Kurzweil K2500 keyboard from around 1999 that has a bunch of the alternate tunings, including three from that era. The Bach-era tunings weren't what we know of as "equal temperament." Truly equal temperament didn't come around until well after Beethoven was dead. I've always interpreted the "Well-Tempered" in Bach's title to mean that he was brining out the strength of each key.…
Source for that? The concept and practice certainly existed well before Beethoven's time but it's less clear at which point it became the norm. Even the wikipedia article on 12 TET has "citation needed" for the claim that it happened in the early 19th century.