We're of completely opposite minds on this. A stop in Fresno should have been sacrificed so that California High Speed Rail could still happen for the majority of the state. Routing through the Central Valley was practically required for political reasons, and now the entire project has collapsed into a parody of itself.
California's cities are not all arranged in a single line. They are in two roughly parallel lines, separated by up to hundreds of miles and across mountains. There are the coastal cities of SF, SJ, SLO, LA, and SD (follows highway 1) and the Central Valley line of Sacramento, Stockton, Merced, Fresno, Bakersfield, Lancaster/Palmdale (follows highway 99 mostly). The 5 is a compromise interstate that runs in between these two, and there is very little development there. If you've ever driven the 5, you know what I'm talking about. Even most towns "on" the 5 are a few miles away.
The HSR line could have been drawn from LA to SF more or less following the 5, stopping at the outskirts of Bakersfield and then zooming straight through to a fork that stops next in either Gilroy (en route to the Bay Area) or Modesto (en route to Stockton and Sacramento). This would have been cheaper, shorter, and less encumbered by the need to get permits, approvals, easements, and the like from everyone in the Central Valley. Meanwhile, the chosen HSR route through the Central Valley runs through dozens of different counties, cities, tax districts, and regional planning agencies.
Also, Fresno is far less dense than Bordeaux, and has a population that generally considers a mile to be a "long walk."