You're saying a lot there, so rather than create a wall of text in response I'd like to boil it down a bit - assume N=25Mb, give or take an order of magnitude:
Are you making the claim that the N bits of DNA involved in coding the brain can encode more than 2^N neural algorithms?
Or do you think that the particular set of 2^N (assuming no redundancy, which is generous...) neural algorithms that N bits of DNA can encode are more likely to result in intelligence than a random sampling of algorithms of equivalent Kolmogorov complexity?
Or are you claiming that epigenetic factors are able to reliably transmit significantly more than N bits of mission-critical data across the generations, and that epigenetic evolution is likely to thank for devising the human intelligence algorithm rather than evolution of DNA?
Edit: looking over your post, I suspect that part of the misunderstanding is over the word "complexity". You seem to be focusing on the complexity of the products; these estimates focus on the complexity of the spec. In humans the difference is muddled because the spec goes through such ridiculously complicated machinery to become the product, but when it comes to designing algorithms, that complicated machinery might as well be a random shuffle for all it matters to the algorithm's proper functioning, so the Kolmogorov complexity that it adds is effectively zero.