He was gone after not because of proving it false, but because he accused the church of purposefully lying I believe.
One could call it not much different but it isn't the exact same as being prosecuted for debunking a "miracle"
From wikipedia:
he skeptic-rationalist author Sanal Edamaruku proved that the water stemmed from a faulty sewage system, which seeped due to capillary action. However, Edamaruku also accused Latin Christian priests of regularly scamming devotees and defrauding miracles to make money, and build bigger and newer churchs or convents,[1] and mocked the Pope as "anti-science".[2] A church representative admitted Edamaruku had the "right to doubt", and Christian activists said that the backlash was not for debunking the alleged "miracle" but for the defamatory statements made live on television.[3]