What things make it more difficult to build those models? A partial list, mostly as others have mentioned:
- tool and library dependencies - nested conditions - loops and especially nested loops - asynchronous processing, callbacks, etc - non-descriptively named variables and functions - using non-standard code patterns for standard functionality - delocalized code, as in, you have to navigate somewhere else to see it (throws off your working memory)
By one study, developers using Eclipse for Java spent 27% of their time just doing code navigation.
The starting point for code complexity is about how our minds work.
As many people have said, "it's easier to write a program than read it."