Earlier quoted context omitted.
Debian could provide their packages as flatpacks too. Not to mention that container images are still mostly built by using regular packages, aren't they? (So they are not as opaque, nor the regular packages go untested.)
So they are not as opaque Ok, say a wild CVE appears and it says libblip versions 1.3 through 2.0.4 have a severity-10 RCE vulnerability and should be patched ASAP. If the container images and flatpaks are not opaque, I presume you have a simple command that lists all vulnerable library versions that are present on all the machines you administer? And, subsequently, that you have an easy procedure to patch them all?
Just pretend that all Flatpak apps were statically linked. Would you have the same complaints? Or would you say that version $x of this app is also affected by the CVE?
In one situation you run apt update and another you run flatpak update.