Earlier quoted context omitted.
Xdotool and xsel have had Wayland equivalents for years: see ydotool/wtype and wl-clipboard. The reason why major orgs have had to push for Wayland is the same as the reasons they had to push for HTTPS and TLSv1.2, unique passwords, keeping software up to date, etc: using outdated and insecure software with significant attack surface has real costs even if it's convenient.
All "equivalents" you mention have less functionality than their originals and some only work on specific compositors like wlroots/sway. Like all things Wayland it's a mess with zero benefits for the user. HTTPS vs HTTP is a false equivalent. HTTP works just fine like before. X11 can be made fully secure (e.g. QubesOS does it) but nobody uses it because there is really no need on a FOSS system where 100% of clients y…
HTTP also doesn't work as well as it did before: Chromium and Firefox have begun rolling out an HTTPS-Only mode that warns when visiting HTTP pages. The landscape has also gotten more hostile: many telecoms have been caught modifying unencrypted traffic. Vodafone was also caught HTTP CSP headers for ad injection.
Firefox devs have expressed interest in removing HTTP-specific logic from FF in the distant future too, with the HTTPS-only mode being the first step. All current browsers have also disabled obsolete TLS/SSL versions, which broke several sites during the initial rollout.
There is no such thing as a trusted client; plenty of FOSS has exploitable vulnerabilities. Rather than "trusted and untrusted" software, the cybersecurity crowd has shifted to thinking in terms of "untrusted and untrusted+malicious".
There's also a reason why software audits typically have their moment of truth during binary analysis, whether or not source code is available: source code is only part of the puzzle. Runtime behavior is influenced by the toolchain behavior, host OS behavior, shared libs, and a ton of other variables that are collectively harder to audit than a black box binary. FOSS' reasons for existing should be primarily related to freedom rather than security. I don't copyleft my work because it improves security, but because it protects users from further infringements upon their freedoms.
I'd suggest chatting up a security researcher or reading some material on modern approaches to exploit mitigations (source availability is not a replacement for exploit mitigation); I could give you some starting points when I wake up if you're interested.