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Scientists who say the lab-leak hypothesis for SARS-CoV-2 shouldn't be ruled out

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421–430 of 662 posts

Re: Scientists who say the lab-leak hypothesis for SARS-CoV-2 shouldn't be ruled out

#421

Earlier quoted context omitted.

You spend an awful lot of time attacking me and not very much time attacking my arguments. That's not very scientific of you. I said I had no way to know you were actually a virologist, which I didn't. It isn't really important to the discussion though, as I said. Can we talk about this like adults? Thanks. I'm only gonna address the science in your post from here on out. I want to make it clear I never insulted you…

>You spend an awful lot of time attacking me and not very much time attacking my arguments. That's not very scientific of you. I said I had no way to know you were actually a virologist, which I didn't. It isn't really important to the discussion though, as I said. Can we talk about this like adults? Thanks. Unfortunately that is impossible for two reasons: 1) Because you have inextricably tied your argument to who y…

And here is probably the most salient argument of all.

It comes down to occam's razor.

Sure, is it /possible/ that some scientist in a lab decided to use an entirely unknown and undescribed natural virus as the subject of their experiments? And use a completely out of nowhere cleavage site from a distant coronavirus that nobody talks about or really studies to do it? And then that virus escaped?

Sure.

But in order for that to be true, we need to make some new assumptions. We need to assume such a person exists, that they had that exact idea, and that it worked and they didn't tell anyone about it, or they all agreed to cover it up, and then some of them got sick (and again, covered it up) and it got out into the public, and voila, pandemic.

Or, it could have been a completely natural event that we know already happens all the time, in the contexts we know it to occur, using mechanisms that have already been described.

On a pure numbers game, on a scale of pure virus-host interactions, which do you think happens more often? People out in the provinces use bat guano as eye drops, eat bat in soups, use bat guano as fertilizer, harvest it without gloves, tour caves without any protection, etc. All of these are well-described. They are all known to occur on the scale of many thousands if not tens of thousands of events per day throughout rural China. Each one of these is a roll of the dice.

OR, how many times do we think a human contaminates themselves in a virology lab in china, working on coronaviruses? or with bats? Sure it probably happens some, but I have a hard time believing it happens more than 100 times per day in China. There just aren't that many bat colonies or virology labs.

So Occam's razor would tell us that the most likely of these two scenarios is the natural one. Is that conclusive proof? no, and I never said it was. I don't think at this point conclusive proof is possible. We're just making estimations. I've always just been making estimations.

A lab release is much less likely than a natural one, even if both are /technically/ possible.

A lot of things are /technically/ possible. On the scale of things, I think the lab leak is likely /enough/ that China should open up itself to international investigators, to show with all available evidence it probably didn't happen. But I don't think it's likely enough that we should all be condemning china, or fueling racist anti-chinese sentiment, or all the other consequences of these news stories. The consequences are right in front of you, anti-asian hate crimes are on the rise in the US, and 30+% of the US thinks the lab release is the most likely scenario.

I'm not saying we stop talking about the lab release, just that we need to put it in the proper context of probability. It is /possible/ but it really is not very /probable/.

Re: Scientists who say the lab-leak hypothesis for SARS-CoV-2 shouldn't be ruled out

#422

Earlier quoted context omitted.

as long as we're discussing the molecular science, I won't have to bring any credentials up. But you just /had/ to get those two little accusations in there, didn't you?

OK so if you go back to here: https://news.ycombinator.com/item?id=26757986 You don't have any molecular biology refutation that I can find.

Hi that's truly quite rude. I link to several, I have a zillion in my post. Are you arguing in good faith?

Re: Scientists who say the lab-leak hypothesis for SARS-CoV-2 shouldn't be ruled out

#423

Earlier quoted context omitted.

Roll a die representing all possible human-bat virus interactions in the world. How many of those rolls land next door to a lab researching these?

Add in bat-livestock interactions and a very hands-on agricultural sector, and you get a real, real lot of rolls. Obviously noone can prove a negative, there's a chance it came from that lab, but the odds are astronomical that it came about the same boring way as bird flu and SARS.

And SARS escaped from a lab twice. In China. The government at the time admitted it. So I’m not 100% that’s the example I’d go with haha.

It’s important to split this in two: one thesis is that it was invented or created or synthesized at a lab in China. This I’m far less bullish on.

The other separate thesis is regardless of origin, man made or wild, it accidentally or intentionally found its way through the doors of a lab in China and into society. It’s this one we’re talking about. At least I am.

Re: Scientists who say the lab-leak hypothesis for SARS-CoV-2 shouldn't be ruled out

#424

Earlier quoted context omitted.

You spend an awful lot of time attacking me and not very much time attacking my arguments. That's not very scientific of you. I said I had no way to know you were actually a virologist, which I didn't. It isn't really important to the discussion though, as I said. Can we talk about this like adults? Thanks. I'm only gonna address the science in your post from here on out. I want to make it clear I never insulted you…

>You spend an awful lot of time attacking me and not very much time attacking my arguments. That's not very scientific of you. I said I had no way to know you were actually a virologist, which I didn't. It isn't really important to the discussion though, as I said. Can we talk about this like adults? Thanks. Unfortunately that is impossible for two reasons: 1) Because you have inextricably tied your argument to who y…

EDIT: just figured out a better way to blastn it. CGG occurs 6,285,392 times in betacoronaviruses, across 84,987 described species.

CGGCGG occurs 81,218 times across same.

Re: Scientists who say the lab-leak hypothesis for SARS-CoV-2 shouldn't be ruled out

#425
post #153

Once again, I will ask for (what I believe is) an interesting piece of context ... How many labs like this one are there in the world ? Are there 20,000 of them ? Are there 7 ? Of the labs like this one in the world, how many of them are doing GoF research on coronaviruses ? 1200 of them ? 1 of them ? This won't be conclusive but given the reasonable heuristics that I work with, having a sense of these proportions wo…

This depends how you define "like this one"; but Zhengli Shi personally discovered the origin of SARS in bats, and her group is probably the world's top researcher of such viruses. The only lab I'm aware of that's remotely competitive is Ralph Baric's. If anyone knows of others with programs of similar scale, please post citations.

Of course far more virology labs exist in the world. But since this pandemic is SARS-like, the correct comparison is only labs working with SARS-like viruses, weighted by amount of such work.

Also worth noting that gain of function may be a distraction. It's entirely possible that SARS-CoV-2 is a naturally-evolved virus but still emerged due to WIV staff activity, either from culture in their lab or just from a researcher who got infected while sampling. The WIV's sampling program was the biggest in the world, visiting remote caves known to be inhabited by infected bats, to bring back samples to be cultured, sequenced, and otherwise manipulated.

If the virus was manipulated in the lab (by genetic engineering, serial passaging, etc.), then it was probably starting from a novel natural virus. Many virologists seeking to exclude a lab origin have noted correctly that SARS-CoV-2 shows no signs of being derived in any known way from any known virus; so the WIV's (considerable) ability to sample new viruses from nature seems more significant to me than their ability to engineer them in the lab.

And just to address the frequent and wrong counterarguments:

1. The WIV is not located in an expected natural spillover zone. Their sampling trips were to Yunnan and surroundings, near Kunming or Pu'er, about 900 miles away.

2. If this was a naturally-evolved virus, then the probability that it was spread by an infected WIV researcher isn't [# of WIV researchers]/[# of total people in Wuhan]. WIV researchers are a vanishingly small fraction of the total population of Wuhan, but they're a large fraction of the total population traveling from remote bat caves in Yunnan back to Wuhan. An expert deliberately seeking novel viruses is far more likely to find one than a merely reckless wildlife smuggler. In theory the expert knows the risks better and will take precautions; but many photographs exist of WIV researchers handling animals with nothing more than a surgical mask and nitrile gloves.

3. The WIV certainly hadn't published every virus they'd collected. For example, RaTG13, the closest known animal virus to SARS-CoV-2, was reportedly collected by them in 2013, but published only after the pandemic emerged. Marc Lipsitch notes that if a researcher had become infected on a sampling trip, then the WIV might never even have sequenced the virus before the pandemic emerged.

To be clear, nothing above says SARS-CoV-2 definitely emerged due to WIV staff activity. The arguments that it definitely didn't all boil down to "because the WIV says it didn't", though, and China has thoroughly obstructed any attempt to audit that claim. It's possible that they're obstructing for a different reason--for example, the CCP's favored "frozen food" theory seems to be trying to exclude not only WIV lab origin, but origin anywhere in China, natural or otherwise. Nevertheless, I'm shocked to see how many people are willing to take the same one-man dictatorship that claims the camps in Xinjiang are for voluntary job training at its word.

Re: Scientists who say the lab-leak hypothesis for SARS-CoV-2 shouldn't be ruled out

#426

Earlier quoted context omitted.

What you wrote here is not wrong, but point number 3 stated: > 3. Lab leaks happen more often than most people realize[1] As I see it, there are two variables involved: - how frequently lab leaks happen (total number of historic leaks - known + unknown) - people's realization / awareness of how often they happen > And now 15 years later, with zero evidence, we're accusing them of covering up the same thing. Regardles…

Re: inspections, Shi Zhengli has been yes. Her government, not so much. I am definitely not a fan of the Chinese government. But the scientists I've met at conferences and the papers I've reviewed from their labs have been of a very high quality. Not saying such people could not commit atrocities or coverups like this. But I do find it personally less likely. That isn't the evidence I rely on most in my personal asse…

I'd think you would also appreciate the idea that leaked from a lab does NOT strictly indicate manipulation -- only that manipulation COULD happen.

None of the bats they claim it came from were sold at the market. Meanwhile, they're tracking down every bat strain they can find and collecting them at the Wuhan lab.

Carelessness in handling would be the root cause whether the virus was manipulated or not. You provide zero evidence on the most important point.

Now, to the more conspiratorial point. UFO pyramid-shaped small drones hounded a US destroyer group for many hours. Any drone flyer would tell you that drones that shape are heavy and even stripped down ones don't fly for dozens of hours.

By the numbers, that requires a huge leap in material science and energy storage. This was not too far from a base that does classified research, so I doubt the cause was more than human.

The military really does keep a generation or two of technology to itself in every area it can. If they did make a breakthrough in quickly modifying viruses, would they publish it in a paper? No more so than the NSA would immediately publish their discovery of differential cryptanalysis. It became public in the late 80s. IBM kept it secret since the early 70s and the NSA knew about it long before that. That’s probably because the NSA employs the lion’s share of mathematicians in those areas (which also makes recruiting more top scientists easier).

Other countries do the same. If Chinese scientists discovered a faster and more natural looking method of manipulation, what incentive would they have to publish a paper? Their only incentive would be to hide it as much as possible and use it as a material advantage in the upcoming and growing conflict with the US.

I believe it was probably naturally discovered and leaked through carelessness, but assuming they couldn’t possibly have had a breakthrough when other countries obviously have in many other areas seems overly confident.

Re: Scientists who say the lab-leak hypothesis for SARS-CoV-2 shouldn't be ruled out

#427
post #406

Earlier quoted context omitted.

Hi I'm not "coming to China's defense" here. I am no fan of the Chinese government I literally find them horrifically oppressive and a place I would /never/ want to live. I am no fan of China. I also anticipated this exact criticism and wrote a whole response to it. See here (#4): https://drive.google.com/file/d/1vRbACWf90iBC35xNOwlI5bWcUq0...

Yes green account, whatever you say.

Hey,

Let me know what proof you would want to show I am who I say I am.

Thanks

Re: Scientists who say the lab-leak hypothesis for SARS-CoV-2 shouldn't be ruled out

#428

Earlier quoted context omitted.

Alina Chan, also not a virologist. She's a geneticst or biochemist. She just uses some viruses in her research sometimes, like basically all biochemists. Calling her qualified in virus biosafety is like saying someone with a PhD in Visual Arts is qualified as an expert in ballpoint pens because they've used them to draw. Sure they know some things about using ballpoint pens and which ones they prefer, but would you t…

this pulling rank thing might work better on reddit, but if you want to make an argument you should give your audience the courtesy of actually making one

Hi I've actually made a dozen or so specific arguments across this post.

You can always respond to those if you want.

Sorry if I come off as condescending but when you have this argument several dozen or hundred times, it gets really really repetitive.

And it's difficult to avoid sounding like a dick. It's not my intent, I promise.

Re: Scientists who say the lab-leak hypothesis for SARS-CoV-2 shouldn't be ruled out

#429

Earlier quoted context omitted.

I hate to nitpick. How do you end up bringing Lamarckism into this? It's thoroughly discredited, and misleading to call it 'evolution'. Did you just travel here from the late 19th century? Mutations are entirely random, usually deletrious. Evolutionary pressure is the selection for fitness.

Actually, CRISPR/Cas is a fantastic example of lamarckian evolution. What I'm trying to say is that it's not pressure into with evolution, but rather, random mutation + purifying selection = evolution of new traits. Organisms can't determine what they need to evolve to. There is no guidance of "evolve to this", but rather - "entirely random evolution maybe I won't die yay" - everything that isn't useful dies. So sayi…

I think you totally get the concepts, but the way you talk about it is strange, hence my time traveler comment :)

You understand the nuances better than most. I'm guessing you're self taught? I've never read the origin of species, but I feel like you might have!

The points you're making are a given in modern evolutionary theory.

https://en.wikipedia.org/wiki/Evolutionary_pressure https://en.wikipedia.org/wiki/Adaptation

>Actually, CRISPR/Cas is a fantastic example of lamarckian evolution.

This, however, is completely wrong.

>Lamarckism, also known as Lamarckian inheritance or neo-Lamarckism,[1] is the notion that an organism can pass on to its offspring physical characteristics that the parent organism acquired through use or disuse during its lifetime.

https://en.wikipedia.org/wiki/Lamarckism

CRISPR has nothing to do with use or disuse. Lamarckism is only relevant as an example of what evolution isn't.

Re: Scientists who say the lab-leak hypothesis for SARS-CoV-2 shouldn't be ruled out

#430

Judging by the comments in this thread, it seems a lot of people are still unaware that: 1. Gain of function research primarily uses samples collected from nature, and seeks to stimulate their evolution in as natural a way as possible to learn how viruses evolve in nature. If such viruses were to escape the lab, they would appear "natural" 2. It's not xenophobic for people from the US to suggest the possibility of a…

Hi, I have a PhD in virology focused on emerging viruses, and a few months back I wrote a very lengthy and involved piece full of sources. And in there, I describe exactly how wrong your point 1 is. And how misguided your point 3 is. The post also won a "best of r/science 2020" award! You can find it here: https://www.reddit.com/r/science/comments/gk6y95/covid19_did...

> The post also won a "best of r/science 2020" award!

It was probably awarded by /u/mvea

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