Some sleuths repaired/decoded a corrupted video file from (the first?) splashdown of a Falcon 9 in the ocean a few years ago [0], so maybe someone is able to tease out some information from the recorded binary data as well? They only searched for obvious string data so far. It's a different beast of course, as the structure and meaning of the data is basically unknown in contrast to the known format of a video file.…
I'm kinda hoping they'll publish some specs about at least part of their transmission data, I mean given that it's not encrypted either means it's not critical, or encryption is too costly. I can imagine that commands the other way do have some kind of encryption.
I'm betting that they don't. The reason that this stuff isn't encrypted is likely the same reason that fighter jets and airliners don't have keys. Yes, someone could jump in and do something bad, but the greater danger is the encryption/lock system causing an accident by getting in the way of legitimate commands. This is the launch vehicle, not the spy satellite.
It is likely that physical realities offer sufficient protection. The rocket might be designed to ignore commands coming from the wrong direction and/or signal strength. It might be that to send a command you would have to be physically co-located with the legitimate antenna array, or be ridiculously more powerful, something that would be very easy to detect.