If you look at the holding, the Court just says that all invalidity defenses must be established by "clear and convincing evidence" (higher than preponderance of evidence but lower than beyond a reasonable doubt.)
It has been well-established that patent validity is a basic assumption. So, a plaintiff must prove patent invalidity by clear and convincing evidence. The issue here is once the plaintiff establishes patent invalidity, how much evidence does the defendant need to give to rebut the assumption of invalidity. The Court said that the higher standard of proof, not the lower standard of proof.
Maybe I'm being thickheaded here, but I don't see how that's terrible at all. In fact, it makes things equal. Once the plaintiff shows patent invalidity, it shouldn't be that easy for a defendant to rebut the assumption of invalidity.