Earlier quoted context omitted.
> It'd be nice if Windows had as nice of a filesystem organization story as any linux distro. ...are you serious? There's a lot of words to describe the Linux filesystem organization and 'nice' is definitely not one of them. Windows file hierarchy has some problems to be sure, but at least it doesn't scatter every application's files all over the hierarchy and require a specialized tool and database to track which on…
It's popular for Linux distributions to have a scattered hierarchy with a package manager, but it certainly isn't a requirement. Take a look at AppImages.
You might have been better to point out the existence of GoboLinux, but that is but one not very popular distro among many.