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How the novel coronavirus has evolved

graphics.reuters.com

11–20 of 137 posts

Re: How the novel coronavirus has evolved

#11
post #2

And I was downvoted on HN for merely asking the question whether coronavirus could mutate: https://news.ycombinator.com/item?id=24035686

You imploed that mutation is the same as a „change in any way biologically”.

Coronaviruses mutate slowly, and the majority of mutations chamge nothing in the way the virus mutates.

So far, out of all the strains, only one has been shown to modify it’s behaviour.

Re: How the novel coronavirus has evolved

#12
So it's finally okay to say there's multiple strains with different infectiousness and (possibly) severity?

Back in February-ish (I forget exactly when), we had confirmed community spread in Washington (West-coast state in the US), with the belief that it had been spreading for weeks and no one noticed, because of how few cases there were, and no bump in hospitalizations. This was likely the Wuhan strain, which likewise had been spreading in Wuhan for at least a month and a half before it was detected.

On the flipside, when it reached Italy, it hit that country hard. It wasn't clear why, but I remember a report sometime during the summer that the most prevalent version of the virus in Italy was distinct from the Wuhan one, and could possibly be labeled a different strain because of its increased infectiousness, that mutation apparently occurring somewhere in Europe and spreading out from there (France was also hit hard at the same time IIRC, but Germany for example was not).

Not long after that I remember a cross-country comparison that said the primary version of the virus in New York (US East coast, also hit hard) matched the one in Italy, but not the Wuhan one, and that what we had in Chicago was a mix of the different strains with (at the time) no one winning out over the others.

Nice to finally see confirmation about there actually being different strains that are shifting over time, but unfortunately the timing makes it look like lockdowns may have selected for the more virulent version and caused the pandemic to be worse than it otherwise would have been (see the graphs in the "G strains take over" section, where the cases spike only after, well, the "G" strains take over and the Wuhan "L" strain has been pushed out).

Re: How the novel coronavirus has evolved

#13
post #11
post #2

And I was downvoted on HN for merely asking the question whether coronavirus could mutate: https://news.ycombinator.com/item?id=24035686

You imploed that mutation is the same as a „change in any way biologically”. Coronaviruses mutate slowly, and the majority of mutations chamge nothing in the way the virus mutates. So far, out of all the strains, only one has been shown to modify it’s behaviour.

"Strain" is defined as a mutation that causes a change in behavior.

Re: How the novel coronavirus has evolved

#14
post #9

“If the virus changes substantially, particularly the spike proteins, then it might escape a vaccine. We want to slow transmission globally to slow the clock,” Is this why some are saying we might need a booster shot in a few years?

I don't think so. I believe that is related to the immune system's ability to "forget". I believe a new strain which evades the current vaccine schemes would need an entirely new or significantly altered vaccine.

Re: How the novel coronavirus has evolved

#15
post #9

“If the virus changes substantially, particularly the spike proteins, then it might escape a vaccine. We want to slow transmission globally to slow the clock,” Is this why some are saying we might need a booster shot in a few years?

No, different reason, booster shots, are needed to "remind" your immune system that the virus is still out there, and keep it on fighting shape, and as far as I am aware, the early discussions for booster shots, were about 6, to 9 months. But all of that is up in the air, there's no data for how the vaccine will develop that much into the future yet

Anyhow, if the spike proteins vary too much, then we'll need a new vaccine all together, not just a booster for the current one

Re: How the novel coronavirus has evolved

#16
post #12

So it's finally okay to say there's multiple strains with different infectiousness and (possibly) severity? Back in February-ish (I forget exactly when), we had confirmed community spread in Washington (West-coast state in the US), with the belief that it had been spreading for weeks and no one noticed, because of how few cases there were, and no bump in hospitalizations. This was likely the Wuhan strain, which likew…

Can you elaborate on why a lockdown would select for a more virulent strain?

Re: How the novel coronavirus has evolved

#18
post #17

So which strain are the various vaccines targeting? Or are they multi strain vaccines like the flu vaccine?

It’s not like the flu. The strains aren’t functionally different, with the possible exception to the one that spilled back over from infected mink which was slightly less responsive to human antibodies in lab experiments. Unless there’s more significant change the vaccine should work for all the different variants.

EDIT- Be careful reading too far into statements like “XYZ mutation makes it easier to bond to ACE2 therefore it’s more contagious” Infection is more than just binding to a receptor, even if lower quality preprints jump the gun in their conclusions

Re: How the novel coronavirus has evolved

#19
post #12

So it's finally okay to say there's multiple strains with different infectiousness and (possibly) severity? Back in February-ish (I forget exactly when), we had confirmed community spread in Washington (West-coast state in the US), with the belief that it had been spreading for weeks and no one noticed, because of how few cases there were, and no bump in hospitalizations. This was likely the Wuhan strain, which likew…

Can you elaborate on why a lockdown would select for a more virulent strain?

I'm mainly basing it on the graphs provided: The cases don't spike until after the "G" strain is present, no matter how long the "L" and "S" strains were present beforehand.

Actually I think I should have said "infective" rather than "virulent" there; basically lockdowns select for versions of the virus that can spread despite the lockdowns. It only looks more virulent because of the larger number of total infections.

Re: How the novel coronavirus has evolved

#20
post #2

And I was downvoted on HN for merely asking the question whether coronavirus could mutate: https://news.ycombinator.com/item?id=24035686

The stuff I get downvoted for boggles my mind (e.g. get downvoted for saying thank you this was a good post). They should rename HN to HM, HiveMind.

A comment that just says "thank you this was a good post" is basically an up-vote in the form of a comment; it doesn't add any substance to the conversation. That would be a polite response in another context, but on HN the goal of the guidelines as I understand them is to keep the signal to noise ratio high - basically to increase the density of useful information and insightful argument in comments. In order to do that, comments that don't add substance to the discussion are discouraged here.
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