I agree. I honestly applaud the stores for paying that much attention, I'd say in Boston/Cambridge I think about 20% of stores understand that their containers require special disposal to handle and couldn't just get mixed in with the municipal compost.
Most just use the compostable containers without a second thought, because why should they give it a second thought? Honestly, I don't blame them, there's no reason they would think about this. It's marketed evil to get people to pay extra for a worse product all around, it's supposed to be confusing.
At MIT they use these compostable containers everywhere. From their own information their compost system cannot handle these containers that their own subcontractors use and don't even communicate this information well enough to avoid confusing MIT FACULTY MEMBERS. It confused me for over a year and I have a PhD in materials science!
Most stores in practice maybe have one waste container under such a special contract in their stores, but customers dispose of their to-go containers elsewhere.
If they were really green they wouldn't have throw away containers for in-store use anyway (setting aside the current situation where it makes sense for now).
So how can it make sense? If the customer is in-store they shouldn't be making waste containers. If the customer is using a container that gets thrown away they're probably walking out the door in which case the special waste container is useless.
I think it would be great if this all worked in a way that makes sense, but as it is now it is worse than nothing anywhere that doesn't have municipal compost already capable of handling these materials.