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Zotero: Personal Research Assistant

zotero.org

111–120 of 211 posts

Re: Zotero: Personal Research Assistant

#111

Earlier quoted context omitted.

We're shipping a new version of Polar ( https://getpolarized.io/ ) this weekend that is sort of closer to the roam/zettelkasten idea of managing notes. Here's a video explaining the new functionality: https://www.youtube.com/watch?v=6M6jNlairGc Basically all the documents you read can have tags. So you can manage all your documents via whatever tag you want. You can then read those documents in Polar directly and hig…

Would it be possible to export annotations into a markdown+wikilink syntax to import into Roam? I love the idea of Polar for document management, and Roam for knowledge management, so I'd love to find a way to use both

We're thinking of adding an generic sync functionality into Polar so that you could keep external connections to thinks like Anki, Evernote, Roam, etc.

The biggest challenge is deletions though so I'm still trying to work out the ideal sync framework.

Re: Zotero: Personal Research Assistant

#112

Earlier quoted context omitted.

We're shipping a new version of Polar ( https://getpolarized.io/ ) this weekend that is sort of closer to the roam/zettelkasten idea of managing notes. Here's a video explaining the new functionality: https://www.youtube.com/watch?v=6M6jNlairGc Basically all the documents you read can have tags. So you can manage all your documents via whatever tag you want. You can then read those documents in Polar directly and hig…

Does the new version handle citations/bibtex export? I really want to use polar but that’s the main value of zotero for me atm.

We're getting there.. The backend supports it now. If you send me a list of your requirements (just create a github issue here https://github.com/burtonator/polar-bookshelf/issues) I will look at adding the functionality you need.

We're adding support for DOI lookup and APIs like Arxiv so you could just add a DOI to polar and it will fetch the PDF and keep the metadata.

Will also support export to bibtex too.

Our big focus right now is shipping 2.0 so that we have a more modern platform that can scale us moving forward.

Re: Zotero: Personal Research Assistant

#113

Earlier quoted context omitted.

Pretty sure I'm the author of the plugin you're talking about :) I did a few updates recently, but I welcome any additions/PRs anyone wants to send.

Can you please link to your plugin?

https://github.com/ethanwillis/zotero-scihub/ Here you go!

Re: Zotero: Personal Research Assistant

#114
post #11

Also chiming in to say I used Zotero for my Master's thesis and I was happy with it. With some plugins (I don't remember exactly) I had a very nice pipeline of "find paper on the interntet" -> Zotero -> automatically updated .bib -> trigger rebuild of Latex document to PDF -> automatic reload in PDF viewer. The UI is somewhat dated but the functionality is great. Nowadays I would probably choose Citationsy, maybe onl…

> The UI is somewhat dated but the functionality is great. I like Zotero precisely because of its UI. It's efficient, and reminds me of the Firefox bookmarks manager. In fact, I wish I could replace or merge Firefox's bookmark manager with Zotero, so I'd get the best of both worlds.

Firefox's bookmark and history manager is atrocious x) Reminds me of IE5 or something like that.

Re: Zotero: Personal Research Assistant

#115
post #69

Earlier quoted context omitted.

It's an open source project. Feel free to fork it and remove parts you dislike.

OP's criticism were fair enough to not deserve a dismissive response. I for one am thankful for their warnings.

Their warnings are wrong.

Re: Zotero: Personal Research Assistant

#116

I've used Mendeley Desktop for some time, which I believe is very similar in functionality (but proprietary, yes Elsevier!): https://www.mendeley.com/download-desktop-new/ Furthermore I think http://www.docear.org/ deserves to be mentioned as another free open-source solution with some interesting mind-mapping functionality: http://www.docear.org/software/screenshots/

Is Mendeley free? I couldnt easily tell from the website. Also, which is better for non-academics, who just want to organize areas of interest/notes? lastly -- how good is their mobile app?

Mendeley and Zotero are both free, but both have storage limits beyond which you have to pay (Zotero is 300M, Mendeley is 2G). If you only store references and annotations you'll likely never exceed those limits, but if you use them as a paper archive you may. (I have a 3G archive)

Re: Zotero: Personal Research Assistant

#117

Zotero phones home with perhaps more information than you expect.[1] By default, there's a persistent connection whenever Zotero is running, a request when you visit a site with a translator (eg NYTimes) the first time since a browser start, when you download a PDF, etc. I enjoyed using it, but their approach to privacy felt creepy. That [1] is somewhat improved... but only somewhat. [1] https://www.zotero.org/suppor…

(Disclosure: Zotero developer) Criticizing Zotero for privacy, of all things, is a bit bizarre. Zotero is an open-source project from a nonprofit organization with no financial interest in people's research data. It's designed as a local tool specifically to give people complete control over their data, and it's developed in the open. Most similar tools are proprietary programs owned by major publishers or analytics…

Thank you for your work.

> designed as a local tool

Nod, a local tool. I have various expectations of my local tools. And if I, say, start Zotero in the morning to read a paper, then exit it for a meeting, then return to it afterward, and then exit for lunch, then at least my own expectations for a local tool are, for example, in tension with those four centralized timestamps. As are the varying tcp routes as I move my laptop among buildings. As is the request when I surf to the NYTimes during lunch.

So what does privacy best practice look like? One comment here suggests the ability to fork and edit the code. Another notes the linked documentation, and being more ethical than Elsevier. The linked page notes the existence of scattered opt-out options. And also "You can avoid these requests by keeping Zotero open while you browse the web."

My own understanding of privacy best practices, includes data exposure being opt-in rather than opt-out, and those privacy preferences being easily seen and changed in one place. My impression is Zotero doesn't do these.

And that's just Microsoft-style privacy practice. It would be even nicer to have knobs, like "check for updates every ".

> Criticizing Zotero for privacy, of all things, is a bit bizarre.

I'd be fine with "we have limited resources; know privacy is important; are improving; know we have work to do to implement best practices, are working towards it".

But my own fuzzy long-term impression has been, that such recognition has not been proportional to the potential degree of privacy exposure.

Re: Zotero: Personal Research Assistant

#118
Big thank you to the Zotero team (@dstillman) for your ongoing work, particularly the much improved web interface. One of my favorite features is to easily share a URL of a Collection with someone interested in the subject.

My setup: writing in Emacs with markdown, export with pandoc, which grabs Zotero's .bib file made with the Better BibTex plugin. Works really smoothly, though takes a little tinkering to get it set up on a fresh rig.

Re: Zotero: Personal Research Assistant

#119

Earlier quoted context omitted.

Is Mendeley free? I couldnt easily tell from the website. Also, which is better for non-academics, who just want to organize areas of interest/notes? lastly -- how good is their mobile app?

Mendeley and Zotero are both free, but both have storage limits beyond which you have to pay (Zotero is 300M, Mendeley is 2G). If you only store references and annotations you'll likely never exceed those limits, but if you use them as a paper archive you may. (I have a 3G archive)

To clarify, Zotero's storage limit is only for syncing of attached files. You can use Zotero entirely offline if you choose, storing as much as you want, and we also support WebDAV or linked files (which can be in Dropbox, etc.) for syncing files in your personal library.

(Disclosure: Zotero developer)

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