There's often a long lead time between writing up benchmarks/white papers and publication. At my last employer it could take well over a month to let everyone have their 2 cents and get through Legal for approval. This is a long enough interval to explain the old/new GROMACS usage. As the saying goes, don't attribute to malice that which can be adequately explained by stupidity (including corporate bureaucracy).
If the publication was delayed to allow time for due diligence then this disclosure should have made the cut. I like to think that Intel had some top-notch benchmarking nerds who were superseded by unscrupulous executives and would not have published a dishonest benchmark otherwise.