I can’t say I’ve got a headache from any of the current crop of 3D films – is my brain doing something different? Also, regarding: "Nothing will fix it short of producing true "holographic" images." See: http://www.holografika.com/
It's not out of the question. When I was very young my eyesight was good enough to develop depth perception, but since then my eyes have gone a bit nearsighted. It's not so bad I wear glasses, but it's bad enough that I don't have reliable parallax-based depth perception. I recently went to see the Tron movie in 3D as an experiment, but I wasn't sure I'd even get depth perception in it.
In fact I did, and I also can't say that it bothered me any more than a normal movie. I think that's because I didn't have the conflict the other people are talking about because my brain stopped rigidly expecting depth perception a while ago. But you can't build the 3D market on people like me.