Earlier quoted context omitted.
> What we have here in the cryptography sense is different: the running time n(c+n) clearly does depend on n; it just does not depend on the actual input. Can you explain to me what the input is, if not c and n ?
Consider the sentence just before “This takes n(c + n) simple operations”, as even quoted by you: “Section 5 […] states our main algorithm to compute c coefficients of the nth iterate of divstep”. So from this it is clear that c and n are the number of coefficients desired and the number of iterations desired; they are not the input to the algorithm (the two numbers or polynomials whose gcd is sought). I'm really cur…
Imagine a magic sorting algorithm that always takes 1 second to check if an input is sorted, and 9 seconds to sort the input if wasn't sorted. It then returns the sorted value as output.
EG sorting "abcdefg" would check (taking 1 second) and then return (taking 0 seconds since it's sorted). Sorting "gfedcba" would check (taking 1 second) and then sort (taking 9 seconds) and return. Taking in the complete works of Shakespeare it would check (taking 1 second) and then sort (taking 9 seconds) and return.
It's O(1), yet the time varies based on the input. From a computational complexity terminology standpoint it's constant time, from a cryptographic terminology (and common intuition) standpoint it's clearly not, since it doesn't always take the same time to run.