Read the narrative in the report. Why do you suppose that after they got the same initial signs of trouble that the Lion Air flight had (stick shaker on left side, disagreement in airspeed values, etc. immediately after takeoff) that the captain tried to engage autopilot and instructed the first officer to retract flaps and inform controllers they were proceeding to climb to FL 320 (32,000 ft). Why not instead turn back and land and hand the aircraft over to maintenance?
From the report:
At 05:38:44, shortly after liftoff, the left and right recorded AOA values deviated. Left AOA decreased to 11.1° then increased to 35.7° while value of right AOA indicated 14.94°. Then after, the left AOA value reached 74.5° in ¾ seconds while the right AOA reached a maximum value of 15.3°. At this time, the left stick shaker activated and remained active until near the end of the recording. Also, the airspeed, altitude and flight director pitch bar values from the left side noted deviating from the corresponding right side values. The left side values were lower than the right side values until near the end of the recording.
...
At 05:39:06, the Captain advised the First-Officer to contact radar and First Officer reported SHALA 2A departure crossing 8400 ft and climbing FL 320.
...
At 05:39:42, Level Change mode was engaged. The selected altitude was 32000 ft. Shortly after the mode change, the selected airspeed was set to 238 kt.
At 05:39:45, Captain requested flaps up and First-Officer acknowledged. One second later, flap handle moved from 5 to 0 degrees and flaps retraction began.
Bear in mind stick shaker and divergent instrument readings all this time.
Why not just return and land, leave the flaps configuration alone (which would have inhibited MCAS), especially since this is exactly how the Lion Air flight started.
I know this is easy to critique from the comfort of my chair, and the pilots are not here to defend themselves, but some things in this narrative just don't make sense.