This all sounds good, with the exception of FileZilla, who (still) distribute malware ("bundled ad offers") with their default Windows downloads. :( Seems kind of bizarre the EU would encourage such practises.
I think it's a stretch to say that the EU is "encouraging" such scummy practices. It's likely that they just collated a list of all software used widely by government departments within the EU -- and thus FileZilla is on the list. Ultimately, a potential 0day causing RCE within a government department is more of a concern to the EU than the optional malware you get during FileZilla's installation.
Think that through. The malware that comes with FileZilla is often reported to be pretty bad.
Agreed, potential a 0 day (especially when targeted) could also have a really bad effect.
But Filezilla's malware isn't theoretical, so could really be the bigger problem.