The issue is that while this order is passed, there is no remedy for the citizens if their privacy is breached in any sense. The power is given to the home ministry, who at this point, think of themselves more as campaigner for next election, rather than an elected govt body, and hence it will be bad for political opponents in elections due in 2019. Since they made it concerning National Security, it is not covered under Right to Information either.
(The order and notification says that the interception and monitor could only be for certain citizens, or group of citizens, if they are deemed a threat for national security. Even Apple might be asked to break the encryption in this case.)