Only if you refuse to apply a hacker-like mentality to spirituality. Hackers will tend toward agnosticism or outright atheism more readily than the average person, sure (they're less likely to take scripture at face value), but will also do so for more obscure or lost-in-history religions (paganism comes to mind), or perhaps a parody religion (SubGenius, pastafarianism, etc.).

In my case, I like to explore what makes different religions tick and try to sort between "hey, this is a good idea" and "oh wow, that's a bad idea". That sorting ultimately determines my own "religious" beliefs. Whether I take the existence of God or the afterlife or what have you literally is immaterial to whether I apply those teachings to my own life.

I certainly agree that organized religion is antithetical to hacker nature. You probably won't find many hackers who are regular churchgoers (at least not to the same church each time), and they're probably not going to be the ones following scripture to the letter. Organized religion is only a subset of religion, though.