Back in my younger, move naive days when I first started using a password manager and such a practice was not as widespread, I had the same question I think most other people have: "If my computer gets hacked or infected, won't the attacker instantly grab all the passwords from the manager?" I chose to use a manager anyway, with the logic that if my system was compromised I was owned either way; memorizing passwords…
Now, malware is a criminal industry. People are making big money off of it. It doesn't make a lot of sense to target individuals when you could go after big, wealthy institutions. Same goes for government malware--they're looking to infiltrate and disrupt rival institutions and industries, not inconvenience private citizens.