She tried girls scouts for a year, then her troop leader left which caused her troop to fold. We could have moved her to another troop, but she didn't want to, she liked the way things were. I would intermittently bring to her different Cub Scout functions. Every time I would she would be included in the activities and encouraged to participate by everyone from leaders to parents.
I wasn't keen on the idea of my son joining a god loving, gay hating, etc. organization. It was his choice, his friends were doing it and I went along to make sure nothing happened. After three years of cub scouting I can say that each troop operates on it's own and does what it's leaders feel is best for the kids. If you don't like how your local troop is run try another one, or just take your kids camping, do weekly exercises on rope tying, building bird houses etc.
In Canada they just have Scouts of Canada the genders are treated equally. My daughter is excited, I'm only saddened she missed out a few years of fun.