The article started by pointing out a logical incongruency that most people have. I know better than to think the tree is made of the ground, however I know many people are not.
However he's talking mass and reneges on his statement that trees are made from the air by stating that many trees are over 50% water. Well IMO when talking about mass the majority-share counts as the subjects mass origins.
The plant breaks down CO2 into C + O2 via photosynthesis. The C makes up the plant. This is the simplified version he starts with, which was an ample metaphor. However then he states that the tree can be predominantly water. Meaning the plant is made up of say 60% water and 40% carbon.
However the plant is made up of predominantly of water trapped within cellulose membranes. If we talk dry weight, we're still talking 6 carbon atoms (72), 10 hydrogen atoms (10) and 5 oxygen atoms (80). This means roughly 66% of the trees mass comes directly from water from the ground sequestered in its cellulose.
This means roughly only 20% of the tree actually comes directly from carbon sequestered from the air.
So really, where does the plant get its mass? The ground.
If you're asking where the plant gets its dry weight, still the ground by ~6%.
By tackling a logical fallacy with scientific thinking he opened the window to be completely corrected by it himself. Trees grow because they take the carbon out of the air. However you talk about mass and we're talking about molecular weights.
Now if he'd have been as smart of Feynman he would have dismissed the water quite logically again. The rain falls from the sky. Save for a few very large trees that actually reach into the water table, trees well inland rely solely on the rain for their supply of water. That means the 50% of its mass that is water still technically comes from the air from moisture being condensed in cold air and forming water droplets.