Earlier quoted context omitted.
I don't believe LE has an upper limit on its number of SANs. For systems not explicitly public, whitelists are almost always better than blacklists.
> I don't believe LE has an upper limit on its number of SANs. The limit is 100, unless they removed that when I wasn't looking. Back in the beta I tried one domain, a handful and then, because I couldn't find a technical reason why SAN should be limited, I tried 500. It fails. I have many certs with up to 100 and would be happy if this changed.
(And if so, in the prior commenter's situation--okay, create three certs. LE might not support 300 certs, but 3 with 100 SANs should work just fine.)